Detailed information of SNP:
|
SNP ID:
sf0918954127(Gbrowse)
Chromosome: chr09 Position: 18954127 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.22% | 47.78% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918954127 | T->G | LOC_Os09g31454(LOC_Os09g31454.1) | INTRON |