Detailed information of SNP:
|
SNP ID:
sf0919012922(Gbrowse)
Chromosome: chr09 Position: 19012922 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.31% | 6.69% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919012922 | C->A | LOC_Os09g31502(LOC_Os09g31502.1) | INTRON |
| sf0919012922 | C->A | LOC_Os09g31502(LOC_Os09g31502.2) | INTRON |
| sf0919012922 | C->A | LOC_Os09g31502(LOC_Os09g31502.3) | INTRON |
| sf0919012922 | C->A | LOC_Os09g31502(LOC_Os09g31502.4) | INTRON |