Detailed information of SNP:
|
SNP ID:
sf0919018906(Gbrowse)
Chromosome: chr09 Position: 19018906 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 98.01% | 1.99% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 94.65% | 5.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919018906 | C->T | INTERGENIC | None |