Detailed information of SNP:
|
SNP ID:
sf0919020545(Gbrowse)
Chromosome: chr09 Position: 19020545 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 86.18% | 13.82% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 63.91% | 36.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919020545 | C->T | LOC_Os09g31514(LOC_Os09g31514.2) | INTRON |
| sf0919020545 | C->T | LOC_Os09g31514(LOC_Os09g31514.4) | UTR_3_PRIME |
| sf0919020545 | C->T | LOC_Os09g31514(LOC_Os09g31514.1) | INTRON |