Detailed information of SNP:
|
SNP ID:
sf0919034988(Gbrowse)
Chromosome: chr09 Position: 19034988 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.51% | 34.49% |
| All Indica | 798 | 40.23% | 59.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 212 | 14.62% | 85.38% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919034988 | T->C | INTERGENIC | None |