Detailed information of SNP:
|
SNP ID:
sf0919141516(Gbrowse)
Chromosome: chr09 Position: 19141516 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 56.64% | 43.36% |
| All Indica | 762 | 93.31% | 6.69% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 360 | 92.22% | 7.78% |
| Indica II | 200 | 94.50% | 5.50% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 38 | 31.58% | 68.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919141516 | T->C | INTERGENIC | None |