Detailed information of SNP:
|
SNP ID:
sf0919195499(Gbrowse)
Chromosome: chr09 Position: 19195499 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 78.44% | 21.56% |
| All Indica | 783 | 95.40% | 4.60% |
| All Japonica | 486 | 49.59% | 50.41% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 363 | 93.94% | 6.06% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 329 | 47.42% | 52.58% |
| Tropical Japonica | 91 | 57.14% | 42.86% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919195499 | T->A | LOC_Os09g32169(LOC_Os09g32169.1) | INTRON |