Detailed information of SNP:
|
SNP ID:
sf0919214040(Gbrowse)
Chromosome: chr09 Position: 19214040 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 94.15% | 5.85% |
| All Indica | 730 | 89.32% | 10.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 87.07% | 12.93% |
| Indica II | 197 | 89.85% | 10.15% |
| Indica Intermediate | 185 | 92.97% | 7.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919214040 | T->C | INTERGENIC | None |