Detailed information of SNP:
|
SNP ID:
sf0919232642(Gbrowse)
Chromosome: chr09 Position: 19232642 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 64.21% | 35.79% |
| All Indica | 793 | 48.93% | 51.07% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 65 | 6.15% | 93.85% |
| Indica I | 371 | 26.15% | 73.85% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919232642 | T->A | INTERGENIC | None |