Detailed information of SNP:
|
SNP ID:
sf0919356736(Gbrowse)
Chromosome: chr09 Position: 19356736 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1268 | 77.84% | 22.16% |
| All Indica | 649 | 57.01% | 42.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 331 | 82.18% | 17.82% |
| Indica II | 160 | 25.00% | 75.00% |
| Indica Intermediate | 158 | 36.71% | 63.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919356736 | G->A | INTERGENIC | None |