Detailed information of SNP:
|
SNP ID:
sf0919372853(Gbrowse)
Chromosome: chr09 Position: 19372853 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 87.56% | 12.44% |
| All Indica | 789 | 96.96% | 3.04% |
| All Japonica | 476 | 70.38% | 29.62% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 76 | 17.11% | 82.89% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919372853 | T->C | LOC_Os09g32450(LOC_Os09g32450.1) | INTRON |