Detailed information of SNP:
|
SNP ID:
sf0919397709(Gbrowse)
Chromosome: chr09 Position: 19397709 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 78.80% | 21.20% |
| All Indica | 785 | 98.47% | 1.53% |
| All Japonica | 492 | 45.73% | 54.27% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 203 | 96.06% | 3.94% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 331 | 28.70% | 71.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919397709 | T->C | INTERGENIC | None |