Detailed information of SNP:
|
SNP ID:
sf0919409239(Gbrowse)
Chromosome: chr09 Position: 19409239 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 71.59% | 28.41% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 462 | 26.84% | 73.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 325 | 6.15% | 93.85% |
| Tropical Japonica | 82 | 87.80% | 12.20% |
| Japonica Intermediate | 55 | 58.18% | 41.82% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919409239 | G->A | INTERGENIC | None |