Detailed information of SNP:
|
SNP ID:
sf0919423275(Gbrowse)
Chromosome: chr09 Position: 19423275 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 58.42% | 41.58% |
| All Indica | 779 | 57.51% | 42.49% |
| All Japonica | 422 | 52.37% | 47.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 83.60% | 16.40% |
| Indica II | 203 | 31.53% | 68.47% |
| Indica Intermediate | 204 | 35.78% | 64.22% |
| Temperate Japonica | 269 | 33.83% | 66.17% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 63 | 74.60% | 25.40% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919423275 | T->C | INTERGENIC | None |