Detailed information of SNP:
|
SNP ID:
sf0919476296(Gbrowse)
Chromosome: chr09 Position: 19476296 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 90.30% | 9.70% |
| All Indica | 785 | 82.93% | 17.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 363 | 65.84% | 34.16% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919476296 | T->A | LOC_Os09g32650(LOC_Os09g32650.1) | Non-Synonymous SNP |