Detailed information of SNP:
|
SNP ID:
sf0919489172(Gbrowse)
Chromosome: chr09 Position: 19489172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.39% | 35.61% |
| All Indica | 798 | 46.49% | 53.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 16.31% | 83.69% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919489172 | C->T | INTERGENIC | None |