Detailed information of SNP:
|
SNP ID:
sf0919506504(Gbrowse)
Chromosome: chr09 Position: 19506504 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1171 | 52.60% | 47.40% |
| All Indica | 554 | 14.08% | 85.92% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 331 | 6.65% | 93.35% |
| Indica II | 104 | 38.46% | 61.54% |
| Indica Intermediate | 119 | 13.45% | 86.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919506504 | T->C | LOC_Os09g32690(LOC_Os09g32690.1) | UTR_5_PRIME |
| sf0919506504 | T->C | LOC_Os09g32690(LOC_Os09g32690.3) | UTR_5_PRIME |
| sf0919506504 | T->C | LOC_Os09g32690(LOC_Os09g32690.2) | UTR_5_PRIME |