Detailed information of SNP:
|
SNP ID:
sf0919514390(Gbrowse)
Chromosome: chr09 Position: 19514390 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 51.73% | 48.27% |
| All Indica | 797 | 24.09% | 75.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 21.07% | 78.93% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 209 | 30.14% | 69.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919514390 | A->T | INTERGENIC | None |