Detailed information of SNP:
|
SNP ID:
sf0919529529(Gbrowse)
Chromosome: chr09 Position: 19529529 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 87.26% | 12.74% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 66.53% | 33.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 87.72% | 12.28% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919529529 | T->C | INTERGENIC | None |