Detailed information of SNP:
|
SNP ID:
sf0919531349(Gbrowse)
Chromosome: chr09 Position: 19531349 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.50% | 38.50% |
| All Indica | 798 | 34.34% | 65.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 210 | 20.00% | 80.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919531349 | C->A | INTERGENIC | None |