Detailed information of SNP:
|
SNP ID:
sf0919587638(Gbrowse)
Chromosome: chr09 Position: 19587638 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 95.44% | 4.56% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 418 | 87.08% | 12.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 264 | 81.06% | 18.94% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919587638 | T->C | INTERGENIC | None |