Detailed information of SNP:
|
SNP ID:
sf0919618300(Gbrowse)
Chromosome: chr09 Position: 19618300 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 51.59% | 48.41% |
| All Indica | 770 | 14.94% | 85.06% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 362 | 7.18% | 92.82% |
| Indica II | 203 | 24.63% | 75.37% |
| Indica Intermediate | 205 | 19.02% | 80.98% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919618300 | C->T | INTERGENIC | None |