Detailed information of SNP:
|
SNP ID:
sf0919631799(Gbrowse)
Chromosome: chr09 Position: 19631799 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 83.91% | 16.09% |
| All Indica | 786 | 98.47% | 1.53% |
| All Japonica | 462 | 57.36% | 42.64% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 365 | 99.45% | 0.55% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 303 | 44.55% | 55.45% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919631799 | C->A | LOC_Os09g32940(LOC_Os09g32940.1) | INTRON |
| sf0919631799 | C->A | LOC_Os09g32940(LOC_Os09g32940.3) | INTRON |
| sf0919631799 | C->A | LOC_Os09g32940(LOC_Os09g32940.2) | INTRON |