Detailed information of SNP:
|
SNP ID:
sf0919648865(Gbrowse)
Chromosome: chr09 Position: 19648865 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 61.08% | 38.92% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919648865 | G->A | INTERGENIC | None |