Detailed information of SNP:
|
SNP ID:
sf0919665947(Gbrowse)
Chromosome: chr09 Position: 19665947 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1303 | 56.95% | 43.05% |
| All Indica | 701 | 96.86% | 3.14% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 50 | 86.00% | 14.00% |
| Indica I | 303 | 98.02% | 1.98% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 190 | 97.89% | 2.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919665947 | G->A | INTERGENIC | None |