Detailed information of SNP:
|
SNP ID:
sf0919712589(Gbrowse)
Chromosome: chr09 Position: 19712589 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.82% | 41.18% |
| All Indica | 798 | 36.47% | 63.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919712589 | A->G | INTERGENIC | None |