Detailed information of SNP:
|
SNP ID:
sf0919717615(Gbrowse)
Chromosome: chr09 Position: 19717615 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1266 | 94.79% | 5.21% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 350 | 83.14% | 16.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 229 | 96.07% | 3.93% |
| Tropical Japonica | 69 | 63.77% | 36.23% |
| Japonica Intermediate | 52 | 51.92% | 48.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919717615 | C->T | INTERGENIC | None |