Detailed information of SNP:
|
SNP ID:
sf0919769551(Gbrowse)
Chromosome: chr09 Position: 19769551 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.57% | 42.43% |
| All Indica | 798 | 27.69% | 72.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919769551 | G->T | LOC_Os09g33520(LOC_Os09g33520.1) | INTRON |