Detailed information of SNP:
|
SNP ID:
sf0919781646(Gbrowse)
Chromosome: chr09 Position: 19781646 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 91.01% | 8.99% |
| All Indica | 793 | 85.62% | 14.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919781646 | A->T | INTERGENIC | None |