Detailed information of SNP:
|
SNP ID:
sf0919810337(Gbrowse)
Chromosome: chr09 Position: 19810337 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 53.65% | 46.35% |
| All Indica | 776 | 21.65% | 78.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 67.80% | 32.20% |
| Indica I | 360 | 3.33% | 96.67% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 203 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919810337 | C->A | INTERGENIC | None |