Detailed information of SNP:
|
SNP ID:
sf0919810774(Gbrowse)
Chromosome: chr09 Position: 19810774 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.34% | 42.66% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919810774 | C->T | INTERGENIC | None |