Detailed information of SNP:
|
SNP ID:
sf0919811273(Gbrowse)
Chromosome: chr09 Position: 19811273 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.59% | 48.41% |
| All Indica | 797 | 19.82% | 80.18% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 211 | 58.29% | 41.71% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919811273 | T->A | INTERGENIC | None |