Detailed information of SNP:
|
SNP ID:
sf0919811438(Gbrowse)
Chromosome: chr09 Position: 19811438 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.59% | 48.41% |
| All Indica | 798 | 19.92% | 80.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 2.40% | 97.60% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919811438 | C->T | INTERGENIC | None |