Detailed information of SNP:
|
SNP ID:
sf0919812123(Gbrowse)
Chromosome: chr09 Position: 19812123 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.55% | 48.45% |
| All Indica | 797 | 19.95% | 80.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 2.40% | 97.60% |
| Indica II | 211 | 58.77% | 41.23% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919812123 | T->G | INTERGENIC | None |