Detailed information of SNP:
|
SNP ID:
sf0919818455(Gbrowse)
Chromosome: chr09 Position: 19818455 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.71% | 5.29% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919818455 | C->T | LOC_Os09g33590(LOC_Os09g33590.1) | Non-Synonymous SNP |