Detailed information of SNP:
|
SNP ID:
sf0919821993(Gbrowse)
Chromosome: chr09 Position: 19821993 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.47% | 43.53% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919821993 | T->G | INTERGENIC | None |