Detailed information of SNP:
|
SNP ID:
sf0919836452(Gbrowse)
Chromosome: chr09 Position: 19836452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 51.66% | 48.34% |
| All Indica | 793 | 87.89% | 12.11% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919836452 | C->T | INTERGENIC | None |