Detailed information of SNP:
|
SNP ID:
sf0919841815(Gbrowse)
Chromosome: chr09 Position: 19841815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 50.14% | 49.86% |
| All Indica | 785 | 14.52% | 85.48% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 369 | 10.84% | 89.16% |
| Indica II | 207 | 14.49% | 85.51% |
| Indica Intermediate | 209 | 21.05% | 78.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919841815 | C->T | LOC_Os09g33610(LOC_Os09g33610.1) | SNPs that introduce stop codons |