Detailed information of SNP:
|
SNP ID:
sf0919843434(Gbrowse)
Chromosome: chr09 Position: 19843434 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 57.88% | 42.12% |
| All Indica | 789 | 28.39% | 71.61% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 367 | 25.89% | 74.11% |
| Indica II | 211 | 27.96% | 72.04% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919843434 | G->C | LOC_Os09g33610(LOC_Os09g33610.1) | Non-Synonymous SNP |