Detailed information of SNP:
|
SNP ID:
sf0919844180(Gbrowse)
Chromosome: chr09 Position: 19844180 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 96.58% | 3.42% |
| All Indica | 795 | 98.74% | 1.26% |
| All Japonica | 460 | 92.39% | 7.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 316 | 99.37% | 0.63% |
| Tropical Japonica | 83 | 81.93% | 18.07% |
| Japonica Intermediate | 61 | 70.49% | 29.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919844180 | G->A | LOC_Os09g33610(LOC_Os09g33610.1) | Non-Synonymous SNP |