Detailed information of SNP:
|
SNP ID:
sf0919859476(Gbrowse)
Chromosome: chr09 Position: 19859476 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1234 | 52.27% | 47.73% |
| All Indica | 615 | 9.76% | 90.24% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 355 | 2.82% | 97.18% |
| Indica II | 102 | 18.63% | 81.37% |
| Indica Intermediate | 158 | 19.62% | 80.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919859476 | G->A | INTERGENIC | None |