Detailed information of SNP:
|
SNP ID:
sf0919859738(Gbrowse)
Chromosome: chr09 Position: 19859738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 31.41% | 68.59% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 8.27% | 91.73% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919859738 | G->A | INTERGENIC | None |