Detailed information of SNP:
|
SNP ID:
sf0919871786(Gbrowse)
Chromosome: chr09 Position: 19871786 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 55.56% | 44.44% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919871786 | C->T | INTERGENIC | None |