Detailed information of SNP:
|
SNP ID:
sf0919872611(Gbrowse)
Chromosome: chr09 Position: 19872611 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 92.89% | 7.11% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 484 | 81.20% | 18.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 76.88% | 23.12% |
| Tropical Japonica | 84 | 95.24% | 4.76% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919872611 | A->C | INTERGENIC | None |