Detailed information of SNP:
|
SNP ID:
sf0919872679(Gbrowse)
Chromosome: chr09 Position: 19872679 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 61.34% | 38.66% |
| All Indica | 787 | 31.64% | 68.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 19.68% | 80.32% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 207 | 25.60% | 74.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919872679 | G->A | INTERGENIC | None |