Detailed information of SNP:
|
SNP ID:
sf0919876748(Gbrowse)
Chromosome: chr09 Position: 19876748 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 797 | 28.48% | 71.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 8.80% | 91.20% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 209 | 33.97% | 66.03% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919876748 | C->T | INTERGENIC | None |