Detailed information of SNP:
|
SNP ID:
sf0919877180(Gbrowse)
Chromosome: chr09 Position: 19877180 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 97.50% | 2.50% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 480 | 93.33% | 6.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 90 | 65.56% | 34.44% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919877180 | C->T | LOC_Os09g33660(LOC_Os09g33660.1) | Non-Synonymous SNP |