Detailed information of SNP:
|
SNP ID:
sf0919888143(Gbrowse)
Chromosome: chr09 Position: 19888143 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 55.54% | 44.46% |
| All Indica | 795 | 94.09% | 5.91% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 64 | 29.69% | 70.31% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 28.95% | 71.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919888143 | C->T | INTERGENIC | None |