Detailed information of SNP:
|
SNP ID:
sf0919894145(Gbrowse)
Chromosome: chr09 Position: 19894145 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 75.05% | 24.95% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 488 | 34.84% | 65.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 328 | 33.23% | 66.77% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919894145 | T->C | INTERGENIC | None |