Detailed information of SNP:
|
SNP ID:
sf0919895951(Gbrowse)
Chromosome: chr09 Position: 19895951 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 56.48% | 43.52% |
| All Indica | 692 | 21.53% | 78.47% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 311 | 18.65% | 81.35% |
| Indica II | 195 | 19.49% | 80.51% |
| Indica Intermediate | 186 | 28.49% | 71.51% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919895951 | A->G | INTERGENIC | None |